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Methylation testing (homocysteine and MTHFR would be the basic tests). If MTHFR is under-functioning, then supplement with appropriate dose of B-Vitamins, folate & TMG, which usually come in a combo (also, Phosphatidylcholine & creatine are great supporting agents, but not necessary to have on a daily basis). Methylation is fundamental for a large % of body’s biochemical processes, including energy metabolism and Phase 1&2 detox, neurotransmitter synthesis, etc etc
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Multivitamin: A low dose, clean multivitamin (such as HIYA or equivalent) or dessicated organ/liver supplement: as a basic nutrition insurance policy. This would include quite a few micronutrients
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Brain supporting nutrients: Fish / fish oil for brain development. Low dose Lithium 1mg is a great addition as well.
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As much as possible/feasible, cook at home with traditional cooking methods such as soaking/sprouting/fermenting/pressure-cooking/rinsing/etc, to minimize anti-nutrients such as lectins/oxalates/phytates/etc (if consuming a heavy plant-based diet). Incorporate some dairy, eggs, ruminant meat and sea food (if your culture allows that, and your body is compatible with it)
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Diet: Needless to say, whole food and minimally processed food, atleast 80% of the time
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LP(a) testing: Yes, I believe this would be good to do at young age, but a lot of doctors (including functional/integrative medicine doctors downplay the importance/relevance of it)
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Circadian alignment / consistency (as per their chronotype) as much as possible and sleep hyegine. I dim the light down throughout the house after 7:00pm. I have setup blue light blocking lamps in kids bed rooms. Low dose magnesium at night. I switch off modem before going to bed (to minimize unnecessary radiation). First thing in the morning = sun exposure (even if its cloudy) + barefoot on the grass + hydration + some movement.
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Exposure to dirt / nature / outdoors (for immune resilience and to cultivate microbiome alpha-diversity)
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Some form of mindfulness / meditation / humming / singing (to gravitate towards parasympathetic state, esp in the evening)
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Needless to say, incorporating some sort of regular sports / excercise
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Nurturing contribution / belongingness / self-esteem. Allowing freedom for kids to experiment and make mistakes (which is something that is still a work-in-progress for me, as a parent of 2)
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The rest of the protocols would be as per personalized testing (e.g. allergy testing, micro-nutrient defeciency testing, etc on a need basis)
Those are just a few that comes to my mind